835333 - Unable to install pymongo module

Status: RESOLVED INCOMPLETE

(Petri Graveyard :: General, defect)

Description

[Stefan Arentz | :st3fan | ⏰ EST | he/him]

I'm trying to push a Python app that uses the pymongo module. (The standard MongoDB client for Python)

It is a C module and installing it fails hard because I think python-dev is not installed on the Petri servers. See the log snippet attached.

====> logs/startup.log <====

Downloading/unpacking gunicorn
 Running setup.py egg_info for package gunicorn
Installing collected packages: gunicorn
 Running setup.py install for gunicorn
   Installing gunicorn_paster script to /var/vcap.local/dea/apps/security-review-statistics-0-0afa3b9fa3a216e4dc7392a5dd73ab36/python/bin
   Installing gunicorn script to /var/vcap.local/dea/apps/security-review-statistics-0-0afa3b9fa3a216e4dc7392a5dd73ab36/python/bin
   Installing gunicorn_django script to /var/vcap.local/dea/apps/security-review-statistics-0-0afa3b9fa3a216e4dc7392a5dd73ab36/python/bin
Successfully installed gunicorn
Cleaning up...
Downloading/unpacking Flask==0.9 (from -r requirements.txt (line 1))
 Running setup.py egg_info for package Flask
   warning: no files found matching '*' under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'docs'
   warning: no previously-included files matching '*.pyo' found under directory 'docs'
   warning: no previously-included files matching '*.pyc' found under directory 'tests'
   warning: no previously-included files matching '*.pyo' found under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'examples'
   warning: no previously-included files matching '*.pyo' found under directory 'examples'
   no previously-included directories found matching 'docs/_build'
   no previously-included directories found matching 'docs/_themes/.git'
Downloading/unpacking pymongo==2.4.2 (from -r requirements.txt (line 2))
 Running setup.py egg_info for package pymongo
Downloading/unpacking Werkzeug>=0.7 (from Flask==0.9->-r requirements.txt (line 1))
 Running setup.py egg_info for package Werkzeug
   warning: no files found matching '*' under directory 'werkzeug/debug/templates'
   warning: no files found matching '*' under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'docs'
   warning: no previously-included files matching '*.pyo' found under directory 'docs'
   warning: no previously-included files matching '*.pyc' found under directory 'tests'
   warning: no previously-included files matching '*.pyo' found under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'examples'
   warning: no previously-included files matching '*.pyo' found under directory 'examples'
   no previously-included directories found matching 'docs/_build'
Downloading/unpacking Jinja2>=2.4 (from Flask==0.9->-r requirements.txt (line 1))
 Running setup.py egg_info for package Jinja2
   warning: no previously-included files matching '*' found under directory 'docs/_build'
   warning: no previously-included files matching '*.pyc' found under directory 'jinja2'
   warning: no previously-included files matching '*.pyc' found under directory 'docs'
   warning: no previously-included files matching '*.pyo' found under directory 'jinja2'
   warning: no previously-included files matching '*.pyo' found under directory 'docs'
Installing collected packages: Flask, pymongo, Werkzeug, Jinja2
 Running setup.py install for Flask
   warning: no files found matching '*' under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'docs'
   warning: no previously-included files matching '*.pyo' found under directory 'docs'
   warning: no previously-included files matching '*.pyc' found under directory 'tests'
   warning: no previously-included files matching '*.pyo' found under directory 'tests'
   warning: no previously-included files matching '*.pyc' found under directory 'examples'
   warning: no previously-included files matching '*.pyo' found under directory 'examples'
   no previously-included directories found matching 'docs/_build'
   no previously-included directories found matching 'docs/_themes/.git'
 Running setup.py install for pymongo
   building 'bson._cbson' extension
   gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Ibson -I/usr/include/python2.6 -c bson/_cbsonmodule.c -o build/temp.linux-x86_64-2.6/bson/_cbsonmodule.o
   In file included from /usr/include/python2.6/Python.h:19,
                    from bson/_cbsonmodule.c:23:
   /usr/include/limits.h:125:26: error: no include path in which to search for limits.h
   In file included from bson/_cbsonmodule.c:23:
   /usr/include/python2.6/Python.h:22:2: error: #error "Something's broken.  UCHAR_MAX should be defined in limits.h."
   /usr/include/python2.6/Python.h:26:2: error: #error "Python's source code assumes C's unsigned char is an 8-bit type."
   In file included from /usr/include/python2.6/Python.h:33,
                    from bson/_cbsonmodule.c:23:
   /usr/include/stdio.h:34:21: error: stddef.h: No such file or directory
   In file included from /usr/include/stdio.h:75,
                    from /usr/include/python2.6/Python.h:33,
                    from bson/_cbsonmodule.c:23:
   /usr/include/libio.h:53:21: error: stdarg.h: No such file or directory
   In file included from /usr/include/stdio.h:75,
                    from /usr/include/python2.6/Python.h:33,
                    from bson/_cbsonmodule.c:23:
   /usr/include/libio.h:332: error: expected specifier-qualifier-list before 'size_t'
   /usr/include/libio.h:364: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/libio.h:373: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/libio.h:491: error: expected declaration specifiers or '...' before '__gnuc_va_list'
   /usr/include/libio.h:493: error: expected declaration specifiers or '...' before '__gnuc_va_list'
   /usr/include/libio.h:495: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_IO_sgetn'
   In file included from /usr/include/python2.6/Python.h:33,
                    from bson/_cbsonmodule.c:23:
   /usr/include/stdio.h:80: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'va_list'
   In file included from /usr/include/python2.6/Python.h:33,
                    from bson/_cbsonmodule.c:23:
   /usr/include/stdio.h:296: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/stdio.h:302: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/stdio.h:314: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/stdio.h:321: error: expected declaration specifiers or '...' before 'size_t'
   /usr/include/stdio.h:349: error: expected declaration specifiers or '...' before '__gnuc_va_list'
   /usr/include/stdio.h:354: error: expected declaration specifiers or '...' before '__gnuc_va_list'
   /usr/include/stdio.h:357: error: expected declaration specifiers or '...' before '__gnuc_va_list'

Comment 1

[Philippe M. Chiasson (:gozer)]

Smells like the python-dev package isn't installed on the staging box.

Can you try again now ?

Comment 2

[Takanori MATSUURA]

This bug lies at rest in the graveyard.